The article discusses the formation of the mechanism of innovative support of the agro-industrial complex. The importance of the role of the state in solving this problem is noted. Attention is focused in the field of Russian and foreign experience in stimulating the transition to the innovative development path according to the priorities of state regulation of the innovation sphere. The formation of the system of innovative development of the agro-industrial complex is taking place in the context of global changes and the global crisis in the external environment and the associated uncertainty. The concept of a system of innovation and information support by an agricultural enterprise acts as a fundamental management tool. The components for regulating the exchange of digital information of the management system and production efficiency are presented. The role and significance of analytical support for decision-making processes in the process of managing an agricultural enterprise is highlighted.